search:rna seq fold change相關網頁資料

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  Quantitative bacterial transcriptomics with RNA-seq
  
  Figure 1. Transcriptional feature map and analysis of the cysK-ptsHI-crr operon. The dRNA-seq data are available at GEO, GSE58556. (a) The genes and feature locations are drawn to scale and annotated to the positive strand of the E. coli MG1655 U00096.3 .
  
  2024-11-13
  
  瀏覽：957
- biorxiv.org
  
  Moderated estimation of fold change and dispersion for RNA-Seq data with DESeq2
  
  rate, as the p-value and adjusted p-value still correspond to the test of zero log-arithmic fold change. It is therefore desirable to include the threshold into the statistical testing procedure directly, i.e., not to lter post-hoc on a reported fold-chan
  
  2024-11-14
  
  瀏覽：977

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Visual RNA-Seq: As Easy As 1-2-3

日期：2024-11-09

Visual RNA-Seq by Integrative Biosciences, Inc. ... RNA-Seq Results Should Be As Easy As 1-2-3. At Visual RNA-Seq, we believe there should not be any barrier or jargon standing between you and your RNA-Seq results....

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De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trin

日期：2024-11-07

Overview of the Trinity RNA-Seq assembler Trinity’s assembly pipeline consists of three consecutive modules: Inchworm, Chrysalis, and Butterfly (Figure 1). We strongly encourage users to first read Trinity’s first publication 8 for an extensive descriptio...

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The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abu

日期：2024-11-12

(a) Between-platform concordance of DEGs against the number of DEGs identified by RNA-seq. Concordance is the overlap of the DEGs from the two platforms with agreement in the direction of fold change. The concordance was adjusted to remove the contributio...

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BMC Bioinformatics | Full text | GC-Content Normalization for RNA-Seq Data

日期：2024-11-07

Transcriptome sequencing (RNA-Seq) has become the assay of choice for high-throughput studies of gene expression. However, as is the case with microarrays, major technology-related artifacts and biases affect the resulting expression measures. Normalizati...

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A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Seque

日期：2024-11-14

(a) Titration order A, C, D, B. Log 2 fold-change is related to cross-platform titration consistency. At sufficiently strong log 2 fold-change, reliable titration is also found across platforms. The dark blue line represents the 22,074 'unmissable' genes ...

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Genome Biology | Full text | From RNA-seq reads to differential expression results

日期：2024-11-13

Many methods and tools are available for preprocessing high-throughput RNA sequencing data and detecting differential expression. ... To use RNA-seq data to compare expression between samples, it is necessary to turn millions of short reads into a ......

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RNA-seq analysis reveals significant effects of EGFR signalling on the secretome of mesenchymal stem

日期：2024-11-12

1. Oncotarget. 2014 Sep 6. [Epub ahead of print] RNA-seq analysis reveals significant effects of EGFR signalling on the secretome of mesenchymal stem cells. Luca AD, Roma C, Gallo M, Fenizia F, Bergantino F, Frezzetti D, Costantin S, Normanno N. Bone ......

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Genome Biology | Full text | Quartz-Seq: a highly reproducible and sensitive single-cell RNA-Seq rev

日期：2024-11-09

Development of a highly reproducible and sensitive single-cell RNA sequencing (RNA-seq) method would facilitate the understanding of the biological roles and underlying mechanisms of non-genetic cellular heterogeneity. In this study, we report a novel sin...

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